11/1/2022 0 Comments Train caret![]() Therefore evaluate the cross validated error vs cp and choose the cp that gives the good value (cp_good).įinally, add it as your control parameter i.e. One followed way is to not provide the cp i.e complexity parameter and perform cross validation (xval), something like: ntrol(minsplit = 20, minbucket = round(minsplit/3), xval = 10)Ĭomplexity parameter (cp) can be thought of as a measure of complexity/ no of splits of your model and you want to increase complexity until your model generalizes to new observations. These are the hyper parameters you can tune to obtain a pruned tree. Xval = 10, surrogatestyle = 0, maxdepth = 30 ) ![]() Maxcompete = 4, maxsurrogate = 5, usesurrogate = 2, Minbucket = round(minsplit/3), cp = 0.01, R documentation below, eg.: rpart(formula, data, method, control = ntrol) If you want to prune the tree, you need to provide the optional parameter ntrol which controls the fit of the tree. If you use the rpart package directly, it will construct the complete tree by default. # 14 14.00000 274.0000 10.To give a proper background for rpart package and rpart method with caret package:ġ. Head(training) # Ozone Solar.R Wind Temp Month Day ind <- createDataPartition(y=DataImputeBag$Ozone, p=0.6, list=FALSE) Some variable has large range, for example: rainfall (0-1000mm), temperature (-10 to 40oC), humidity (0-100%), etc. Head(DataImputeBag2) # Ozone Solar.R Wind Temp Month Day PreImputeBag2 <- preProcess(airquality, method="knnImpute") # normalizationĭataImputeBag2 <- predict(PreImputeBag2, airquality) Head(DataImputeBag) # Ozone Solar.R Wind Temp Month Day ![]() PreImputeBag <- preProcess(airquality, method="bagImpute")ĭataImputeBag <- predict(PreImputeBag, airquality) While, in theory, this is a more powerful method of imputing, the computational costs are much higher than the nearest neighbor technique. When a new sample has a missing predictor value, the bagged model is used to predict the value. For each predictor in the data, a bagged tree is created using all of the other predictors in the training set. New_airquality2 <-replace(airquality, TRUE, lapply(airquality, NA2mean))ĭim(new_airquality2) # 153 6 head(new_airquality2) # Ozone Solar.R Wind Temp Month DayĪlternatively, bagged trees can also be used to impute. NA2mean <- function(x) replace(x, is.na(x), mean(x, na.rm = TRUE)) # 6 28 NA 14.9 66 5 6 new_airquality1 <- na.omit(airquality)ĭim(new_airquality1) # 111 6 head(new_airquality1) # Ozone Solar.R Wind Temp Month Day library(base)ĭim(airquality) # 153 6 head(airquality) # Ozone Solar.R Wind Temp Month Day Load dataset airquality( New York Air Quality Measurements): Daily air quality measurements in New York, May to September 1973. # Levels: setosa versicolor virginica table(iris$Species) # # virginica virginica virginica virginica virginica virginica # versicolor versicolor versicolor versicolor virginica virginica # versicolor versicolor versicolor versicolor versicolor versicolor # setosa setosa versicolor versicolor versicolor versicolor # setosa setosa setosa setosa setosa setosa # "Species" factor(iris$Species) # setosa setosa setosa setosa setosa setosa ![]() rm(list=ls())ĭim(iris) # 150 5 names(iris) # "Sepal.Length" "Sepal.Width" "Petal.Length" "Petal.Width" The species are Iris setosa, versicolor, and virginica. Load dataset ‘iris’( Edgar Anderson’s Iris Data): This famous (Fisher’s or Anderson’s) iris data set gives the measurements in centimeters of the variables sepal length and width and petal length and width, respectively, for 50 flowers from each of 3 species of iris. ![]()
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |